Academic Background

Present: PhD student in Department of Chemical Engineering, Boğaziçi University

2010: M.Sc. in Department of Chemical Engineering, Boğaziçi University

2004: B.Sc. in Department of Chemical Engineering, Boğaziçi University

BIOSYSTEMS ENGINEERING RESEARCH GROUP 

Publications 

1. Cankorur-Cetinkaya A., Dereli E., Eraslan S., Karabekmez E., Dikicioglu D., Kirdar B., (2012), "A Novel Strategy for Selection and Validation of Reference Genes in Dynamic Multidimensional Experimental Design in Yeast", PLoS ONE 7(6): e38351 doi:10.1371/journal.pone.0038351.

2. Dikicioglu D., Karabekmez E., Rash B., Pir P., Kirdar B., Oliver S.G., (2011), How yeast re-programmes its transcriptional profile in response to different nutrient impulses, BMC Systems Biology, 5:148, doi: 10.1186/1752-0519-5-148.  

Thesis

M.Sc., 2010: Comparative Analysis of TEAFS and NP Analysis to Integrate Interactome and Transcriptome Data to Reveal Response to C-Pulse in S. cerevisiae

Contact:

E-mail:

erkan.karabekmez_at_boun.edu.tr

Phone:

+90 212 359 7420

Fax:

+90 212 287 2460

Adress:

Bogazici Universitesi, Kimya Muhendisligi Bolumu,

Bebek 34342, Istanbul-TURKIYE

 Research Interests

· Dynamic data handling approaches

· Metabolic networks, FBA, optimization

· Genome scale data integration methods

· Graph theoretic properties and modularity in biological networks